NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105189_1015222

Scaffold Ga0105189_1015222


Overview

Basic Information
Taxon OID3300009794 Open in IMG/M
Scaffold IDGa0105189_1015222 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3438_5245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)716
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-9.4986Long. (o)-25.9999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014809Metagenome260Y
F100046Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0105189_10152221F100046N/AKLSTNAINMIGSDSGRKTLVGATGIALAGAFARSRFPQLKLGGSKLYFRI*
Ga0105189_10152222F014809N/AMATTITRTFDSTPTDQTYFSLTDNMSSSNLGNIQVPDGATRISRVDFTFACFNPKGYEVVCRLSGSNMSEQNFTLMGVDGDGTADSGIVNTSGSCDVAFPVVGVNNIDLQIAIQYASGGSATASSGAVTLYFE*

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