NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116223_10028016

Scaffold Ga0116223_10028016


Overview

Basic Information
Taxon OID3300009839 Open in IMG/M
Scaffold IDGa0116223_10028016 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3861
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F003859Metagenome464Y
F025427Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0116223_100280161F003859N/ALTRKGDSRMNEWNAERSTGLEMTNVASSWPGASLYKSLKHGWQWRRLKWAVAAASEATQGHEANGVRPGAQEFKTLYDEVATRVQRYSGEASVPIDTLKAKLPALCAIERLANPETSVPQNRLGLTLGVVIASVLGSIGIGVLIGLGTGMAHWIARLFA*
Ga0116223_100280164F025427N/AMEELLASLKTCPVQKKGLFWRLLKLYWKKLLFIALMLVLPGGLIVLFLCVTAWALNWEHEMTAYMDETFKKWKEEHDLHSE*
Ga0116223_100280165F002761N/AMVWAGLGKLNELARFVGFKRARPRESALRWINSHKVIALTTTEVVNYSVHGVSSPLGVTFALGGTIVNTLMVAFVVPIWCRLTRLESRLS*
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