Scaffold Ga0126313_10014539

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0126313_10014539

Scaffold Ga0126313_10014539

Overview

Basic Information
Taxon OID	3300009840 Open in IMG/M
Scaffold ID	Ga0126313_10014539 Open in IMG/M
Source Dataset Name	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5092
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location Name	UC McLaughlin Reserve (Lake County, CA)
Coordinates	Lat. (^o)	38.8722	Long. (^o)	-122.4269	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005802	Metagenome	390	Y
F006363	Metagenome / Metatranscriptome	375	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126313_100145395	F005802	AGGAG	MPEENVTGRRHALLVDVTQAASEVSRLVHEARDLHLPVEFGVREGRDALVRWAGLLEEVIP*
Ga0126313_100145396	F006363	GGCGG	MWQAAGMDLPSNPPVSPAVRITVLLRLASEGFQDAFDTRPEWLEAPPVDLAELREVVGVERIGQLREATGLREGEGYAAGGPAGVVRLAAAAHEGVLGLLGVAALPPEVIIEQTDQGPRYHVPEDWFLTTPAGGPGRG*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.