NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126313_10034899

Scaffold Ga0126313_10034899


Overview

Basic Information
Taxon OID3300009840 Open in IMG/M
Scaffold IDGa0126313_10034899 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3474
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8722Long. (o)-122.4269Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030872Metagenome184Y
F039477Metagenome163Y
F043250Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0126313_100348994F030872N/ALAVRCAGTKRDKSPCTATVEPPQRFCWWHDPANADKRRRAASKAGKSKPSRELAGIKQRLSDLADDVLEGRQDKGVAAVVSQVLNVYLRAVSVELKVKEQLEVIERLEQLEEGLKQSKGSSSRWGA*
Ga0126313_100348996F039477N/AMKRLERGAREDLASFVLEDGSRYYYDPASGDCFLHSMDCLRAQGECEPFPEPPETVKAIAKARDRRAALNQLYPNGSFGIFPYEEEALVEHGELVPRSLVAGREVGEPLPDLSE*
Ga0126313_100348998F043250GGAGGVGPKTMQLLKAMRGQLGDASASRSVDAVAAGVGLGMDTTTHDFDRRLQDLVRAGYLEPDPNSAAPVARGRY
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