Basic Information | |
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Taxon OID | 3300009840 Open in IMG/M |
Scaffold ID | Ga0126313_10065912 Open in IMG/M |
Source Dataset Name | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2593 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | UC McLaughlin Reserve (Lake County, CA) | |||||||
Coordinates | Lat. (o) | 38.8722 | Long. (o) | -122.4269 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006538 | Metagenome | 370 | Y |
F012324 | Metagenome | 281 | Y |
F041055 | Metagenome | 160 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0126313_100659123 | F012324 | AGGAGG | VTDRDEIRLPPGYRLDRSDSDVLALRNPEGWAVAYLSARGATREAIEKTAWENYDGEEVYP* |
Ga0126313_100659124 | F006538 | GAG | MPCELCRGGDEWIKTCLTPEGSRLLVCDPCYEENASVLVIVPGDRVVMARCDHCWRYGNPREFVEVRPGGRKNAYSGTCAECTEEGP* |
Ga0126313_100659127 | F041055 | AGGAG | MDEARITRPFPPSTRAIVANEDFCQQVAALLLCHRGPIHDAFIGEPVEEVLEMVRWALSHEDEGFDTAEVLASWAKKRGRGAWSGRPRRPERNSDAELTWALANFWAEHPRELAELLERVQARVNANGRS* |
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