Scaffold Ga0126313_10082594

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126313_10082594

Scaffold Ga0126313_10082594

Overview

Basic Information
Taxon OID	3300009840 Open in IMG/M
Scaffold ID	Ga0126313_10082594 Open in IMG/M
Source Dataset Name	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2332
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location Name	UC McLaughlin Reserve (Lake County, CA)
Coordinates	Lat. (^o)	38.8722	Long. (^o)	-122.4269	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036415	Metagenome / Metatranscriptome	170	Y
F057658	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126313_100825941	F036415	AGGAG	VVEEGTRKEDSVSEQRLQKYRPGDEIDVVVHIEHAPMHLREVSARFFSKGEEGGIISHMDLSGTPSTSEDQPSQQQASLQSEVRLSAKVASDGAPGVYRLNRVTVKTYGGREHHYSAEELDEMGFEIVEEPDNRPVLQIEMGFRTDY*
Ga0126313_100825942	F057658	AGGGGG	MDDNHRKAEQRAREMETARPQSTDEAVQGRMARLDVSQELARYLLDLETRIWELEMELKELKQRPN*

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