Scaffold Ga0130016_10001107

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0130016_10001107

Scaffold Ga0130016_10001107

Overview

Basic Information
Taxon OID	3300009868 Open in IMG/M
Scaffold ID	Ga0130016_10001107 Open in IMG/M
Source Dataset Name	Activated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plant
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Novogene Bioinformatics Technology Co., Ltd
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	56621
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (78.57%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater → Activated Sludge Microbial Community In Wastewater Treatment Plant From Tai Wan

Source Dataset Sampling Location
Location Name	Taiwan
Coordinates	Lat. (^o)	25.0	Long. (^o)	121.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003908	Metagenome / Metatranscriptome	462	Y
F020435	Metagenome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0130016_1000110722	F003908	AGGAG	MTCVTISRLSVLLALSLLGCSSGGKKHPMTLEQMIAADPLPLAKGAKWTYEVTVKKFDPDTNKETTKTLDWTTEVLDATEQNGITAYRVKGWPADLTDFDQTPVATERTLLRSGNSFLFGTSPEPTLDGAEGWFKWPVIDGQKICPKAEMVYCWQVAAIETGYALSFYTGPDEQTYELEPGTGVSRFHYAHHGTTNEVNAKLKSYSKGK*
Ga0130016_1000110736	F020435	AGGAG	VIRLSELVSAFSPSQFTQLALLLFVAVFVAVAIRHGGKRRAAEHAECAQLPLADDAGDRK

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