NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0130016_10001834

Scaffold Ga0130016_10001834


Overview

Basic Information
Taxon OID3300009868 Open in IMG/M
Scaffold IDGa0130016_10001834 Open in IMG/M
Source Dataset NameActivated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plant
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Novogene Bioinformatics Technology Co., Ltd
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43445
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (51.28%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater → Activated Sludge Microbial Community In Wastewater Treatment Plant From Tai Wan

Source Dataset Sampling Location
Location NameTaiwan
CoordinatesLat. (o)25.0Long. (o)121.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057967Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0130016_1000183423F057967N/AMRTAVNRDAKSQTALIALARTRRMQRALAHAYIHRDAPLPTLRLSLGFMMSTACTTDEVPGLGHRMTLLGVALAEGVAYAVEEIGETETPIVYRLWLSGPRAGHLVPLHAWYEQAHHAAEIRARIAAIAATLEPVTEATKEAWMLSTRIVQRRALRVGGRGEPPIRKFALQLCVEPVSGHAPSGHTTVTAFLRPNATLSDVWTLPGDRGAIARVTYTGIPSGLGLAKDTLLLLTD*
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