Scaffold Ga0131092_10168857

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0131092_10168857

Scaffold Ga0131092_10168857

Overview

Basic Information
Taxon OID	3300009870 Open in IMG/M
Scaffold ID	Ga0131092_10168857 Open in IMG/M
Source Dataset Name	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Novogene Bioinformatics Technology Co., Ltd
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2359
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Activated Sludge Microbial Community Analysis In Wastewater Treatment Plant From Tai Wan

Source Dataset Sampling Location
Location Name	Tai Wan
Coordinates	Lat. (^o)	25.0	Long. (^o)	121.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027031	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0131092_101688572	F027031	AGCAGG	MTSTWRTVALLYPVLDARYGSGLRRGHARRVMGRDERTTIEGVLERLPATVHAWSDGLATLDPLDVIEVRRPIRGLSSSGGGRWWVAPRECREELELYVSPDRYDSVYALWPGDPGVPQCGWGCTLGPSEATFGAGFSSISTDHWLTLATDPDPEQGYVHEWLHQVEAVYRGLGLDESALPNLHAAGNFTSTRPADEPPFGRSYAAYHDGVGTGRGPARTWSPWYRDWMTGRLQRADPASRGGAAVEAVARTPIGLTPDRWALRDGGPRRVA*

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