NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0130077_14350327

Scaffold Ga0130077_14350327


Overview

Basic Information
Taxon OID3300009871 Open in IMG/M
Scaffold IDGa0130077_14350327 Open in IMG/M
Source Dataset NameCow rumen microbiome (microbial/fungal) from cows held on UI at Urbana campus farm, Champaign, IL - Rumen Fluid.Combined Assembly of Gp0148671, Gp0148672
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1550
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Cow Rumen Metatranscriptome

Source Dataset Sampling Location
Location NameUniversity of Illinois at Urbana - Champaign, Illinois, USA
CoordinatesLat. (o)40.096Long. (o)-88.2315Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018657Metagenome / Metatranscriptome233N

Sequences

Protein IDFamilyRBSSequence
Ga0130077_143503272F018657N/ALTENMYDEMKKTNESNLEAIRGMRNEFAEEVDFMERKYEYFLDNNPFDMNIKLVNKIYDNIIELVNQKRDDTLKRMVALKDNYQKNITQNIEKIKDMIKKSDDIDRRINAELRKMAGQQPFEFCRDLLDTNVSSDLADECNDINIFQKQEFTRIKQSFIDTNTIVFNDSNALIDHCKTFREYISEKINNFFQNYTKYMSKYAFTVVMNNKEFIVYLIDSNKITKVTYVNDFVIPCYARWIEISGNKLILTGGEKDYIESLNSTYMFKFRQIGDTDEGFSAKVYHKKDMIYKRRAHSLIYFNDYIYAISGVDKLEMIKKCEKYNIFNDEWIEIPELNYNRQNAALAIHNQRYLYAFSGYDGFRNVDTFEKLDFLNEEKGWELLELKSTSKDCEEVDVKKNRMGVISLDFDRMLIFGGERNNKEYKDAYIYEFYEKKFYQFADLVRTSNFIMSPVYFQGKYIIFDFLNNIHELNL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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