NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0130079_10345863

Scaffold Ga0130079_10345863


Overview

Basic Information
Taxon OID3300009872 Open in IMG/M
Scaffold IDGa0130079_10345863 Open in IMG/M
Source Dataset NameCow rumen microbiome (microbial/fungal) from cows held on UI at Urbana campus farm, Champaign, IL - Switchgrass. Combined Assembly of Gp0148675, Gp0148676
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)584
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Cow Rumen Metatranscriptome

Source Dataset Sampling Location
Location NameUniversity of Illinois at Urbana - Champaign, Illinois, USA
CoordinatesLat. (o)40.096Long. (o)-88.2315Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001266Metagenome / Metatranscriptome734Y
F044264Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0130079_103458631F001266N/AMHLGPFGCPTKLNAKRAELVQKFVSRSRVGIFRNE
Ga0130079_103458632F044264N/APYETRWKTGRTSAKVRATKSRRNFSQKRTRSTPLDSKLTFWCVFCTIWVHSGPFGCLTKLGGKRAELVQKFVPRSHVRIFRNERSQSNPLDPKLTFWCVSYHLGAFGTVLLPYETRYKTGRTSAKVRATKSRRNFSQRTHPVHPMGL*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.