NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0131077_10980561

Scaffold Ga0131077_10980561


Overview

Basic Information
Taxon OID3300009873 Open in IMG/M
Scaffold IDGa0131077_10980561 Open in IMG/M
Source Dataset NameActivated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Novogene Bioinformatics Technology Co., Ltd
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)722
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater → Activated Sludge Microbial Community Analysis In Wastewater Treatment Plant From Tai Wan

Source Dataset Sampling Location
Location NameTai Wan
CoordinatesLat. (o)24.0Long. (o)120.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007586Metagenome / Metatranscriptome348Y

Sequences

Protein IDFamilyRBSSequence
Ga0131077_109805612F007586GGAGGMGRVRVREKGEARLSSLIALVVLVAFGLAAWNVVPVYYDHYDFVDKVNEICRTPPYKARKGDETIREMLMKEVQERRLGRWIGPESFLVSSTSSSRQIELYYEREVEILPGFKKTFKFNFKADQPLI*
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