NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133741_100191

Scaffold Ga0133741_100191


Overview

Basic Information
Taxon OID3300009965 Open in IMG/M
Scaffold IDGa0133741_100191 Open in IMG/M
Source Dataset NameHuman saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 7
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAutonomous University of Barcelona
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7529
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Source Dataset Sampling Location
Location NameAlicante,Spain
CoordinatesLat. (o)38.3852246Long. (o)-0.5132249Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F105378Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0133741_1001914F105378AGGMNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKSKWNNKLNEPVPMQDHLENNQIGYDSTNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTIIRNNKFNEAGQLITPLFVDVQCVEYTAGDLGEVSVSYTVDSISIYNTGSFTGSFQCLIVYPLGSVNE*
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