NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133736_1338836

Scaffold Ga0133736_1338836


Overview

Basic Information
Taxon OID3300009966 Open in IMG/M
Scaffold IDGa0133736_1338836 Open in IMG/M
Source Dataset NameTermite gut microbial communities. Combined Assembly of Gp0151149, Gp0151152, Gp0151222, Gp0151223
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Luxembourg, Luxembourg Institute of Science and Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)993
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Anaplasmataceae → Wolbachieae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Insecta → Digestive System → Unclassified → Unclassified → Termite Gut → Multi-Omic Termite Study

Source Dataset Sampling Location
Location NameFrance
CoordinatesLat. (o)48.913957Long. (o)2.485499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028845Metagenome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0133736_13388361F028845N/AMPVSFVSKDKVEENLQSSTNQPAKKSVLPLFSGKLSVDENLKLSHEEFKQTICDFFKDKYITPLSQLTTTPPFPTPYVLAQFALKTCTDYKTRETDAEYETRLALPDGWKLLTTASNFRRNKGYFGAAYWHPEHQQVVIAHRGLDPTNFGALWTDVAGMLLNHSVRQMGSASTFANKVVEVL
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