NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105129_114646

Scaffold Ga0105129_114646


Overview

Basic Information
Taxon OID3300009975 Open in IMG/M
Scaffold IDGa0105129_114646 Open in IMG/M
Source Dataset NameSwitchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_187 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)570
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Source Dataset Sampling Location
Location NameAustin, Texas
CoordinatesLat. (o)30.387Long. (o)-97.7301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000330Metagenome / Metatranscriptome1285Y
F037007Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0105129_1146461F000330GGTGGVRSLRKIPMRLRGTNFCTSSAHFAPSFVSQRNGLECTQIVQNAQKRQFRVVWGGSGAFVAKNSDAT
Ga0105129_1146462F037007N/AHQHVSLGSKGVDWVRSWRKNPTRLRGTNFCTSSARCAPSFVRQPNILECTEMVRNALKCHFRVQWSGSGAFVAKNSDATSWHELLHFSARFAPSFVRQPNGPGCTQIVRHTPTCQFRVQRGGLGAFVAKNSDATSWHELLH*
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