NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105128_105521

Scaffold Ga0105128_105521


Overview

Basic Information
Taxon OID3300009976 Open in IMG/M
Scaffold IDGa0105128_105521 Open in IMG/M
Source Dataset NameSwitchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_186 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)760
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Source Dataset Sampling Location
Location NameAustin, Texas
CoordinatesLat. (o)30.387Long. (o)-97.7301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000492Metagenome / Metatranscriptome1078Y
F019591Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0105128_1055211F000492GGAMKLDAKLGELVQLM*KLVP*SHARIFLYERTQSTPLGTKLMF
Ga0105128_1055212F019591AGGMEWIACVCCKKSRRDFVARTFALIAPVHTVLNRVSCSYEMITDEPKHYETYQNMSLGTNVLDWLRSLRKIPT*LRGTNFCINCTSSHRFAPSFMQLRNNKR*THTL*NLPKHEFRVLDWVRLLRKITT*LRGTYLCINCTSSHCFAPSFMQLQNDPKFTQTLCNAPKDEFRVQWGGLGAFVAKNPDVA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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