NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105036_118583

Scaffold Ga0105036_118583


Overview

Basic Information
Taxon OID3300009985 Open in IMG/M
Scaffold IDGa0105036_118583 Open in IMG/M
Source Dataset NameSwitchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_101 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)622
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Endophytes → Unclassified → Switchgrass Leaf → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Source Dataset Sampling Location
Location NameUSA: Austin, Texas
CoordinatesLat. (o)30.387Long. (o)-97.7301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068340Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0105036_1185831F068340N/AL*NAPNHEFRVQWGGSGAFVAKSSRCDFIEQTCPLIAPVQYVLHQLS*TYKTIPNPPKYYETH*NISLGSNGVDWVHSLRKIST*HCGTNFCINCSSSSCFAPSFMQLRNDPKCTQTL*ITPKHEFRVQWGGLGAFVAKNTM*FRGTNFCIN*TSSVCFETSFMQLQNDAKCTQILRNAPKH*
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