NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105139_1002387

Scaffold Ga0105139_1002387


Overview

Basic Information
Taxon OID3300009995 Open in IMG/M
Scaffold IDGa0105139_1002387 Open in IMG/M
Source Dataset NameSwitchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1765
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Source Dataset Sampling Location
Location NameAustin, Texas
CoordinatesLat. (o)30.387Long. (o)-97.7301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000698Metagenome / Metatranscriptome930Y

Sequences

Protein IDFamilyRBSSequence
Ga0105139_10023871F000698N/AKLEAKRAELVQKFVPRSRVGIFRNERTRSTPLDCKLMFGAFRTIWVHLGLFGCLMKIDAKWAELVQKFVPRSCVRIFRKKRTRSTPLDPKLLFWCISYNLGAFGTIWLPYENRCKTGRTSAKVRATKSRRNFSYQTHPIHPIGP*
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