Scaffold Ga0133925_104604

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0133925_104604

Scaffold Ga0133925_104604

Overview

Basic Information
Taxon OID	3300010011 Open in IMG/M
Scaffold ID	Ga0133925_104604 Open in IMG/M
Source Dataset Name	Beer lees fermenting microbial communities from anaerobic reactor in biotech lab of the University of Hong Kong, China - sample2_75d
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7150
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Reactor → Draft Genomes Reconstructed From Beer Lees Fermenting Consortia

Source Dataset Sampling Location
Location Name	Hong Kong
Coordinates	Lat. (^o)	22.3964	Long. (^o)	114.1095	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F075996	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133925_10460414	F075996	N/A	MDMINSATGQAVGILLPFWSYLPTNKVSPKGFLYPVSQVMKEGDVLRFVVLIGDAEDEAPLAGKDFFWQDVKRMFRPKFFCADMTVLFRDRMCNFTALYARKGGLFFNGRRAGDFADAGEVFAHYGLQEVWNLITGDIKPSCCVYKYGRLFVPETEVCLGLVSEKANFPKGYDMKDLARVEKLLEEAGAYKIPEEISLAEVEKKLSKFAEIEKFLDEFSSDRETLLR*

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