Scaffold Ga0130028_100001

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0130028_100001

Scaffold Ga0130028_100001

Overview

Basic Information
Taxon OID	3300010023 Open in IMG/M
Scaffold ID	Ga0130028_100001 Open in IMG/M
Source Dataset Name	Terrestrial hot spring microbial mat viral communities from Octopus Spring, Yellowstone National Park, Wyoming (2009) spADES assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Duke University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16155
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (57.89%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Terrestrial Hot Spring Microbial Mat → Terrestrial Hot Spring Microbial Mat Viral Communities From Octopus Spring, Yellowstone National Park, Wyoming

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming
Coordinates	Lat. (^o)	44.53408	Long. (^o)	-110.7979	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F068875	Metagenome / Metatranscriptome	124	N
F081384	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0130028_1000014	F081384	N/A	MLIEPSDFGGEYRLFNANNLDPDTIRAIDQAQEELARDLFPIGYSFIISNLPSDPPNLGLRMLGLHKLFVPWVFLRLELGILGAGVKRASDVPGRSRFASGAFFAIAREYKYFLGAWLEHEGYIGAIAVSSTLIAVPIVASQIVAPGMEIEIEGIGKYSVVASASGLLTISPALPAGVSNLRFRQISLRIDRKWNYL*
Ga0130028_1000018	F068875	N/A	MAPIVKLIFTTRVNQLITDPATQLELSPTNTNFPDIYRLITPRLDDVSSERPEAITEEIGATTYYVRDAARTITATVGQLPTEWAQRVAELRCQAEVGVFLVDANGTIWGRKVDTPTGVAGAPLPIVPSSIDARFAFPSYSSVQKHIITFQLPFTLADYEIIPLWNNQAVLNNSAPQPVGFRVFQEAGNWVVFLFTKYHAPNGTIVVPIANVANPADIDIYNASGTTLVASGSTNLGGGKYALNNPLTTGTQYILDCTAITSPPRTQFDWPALRVPFRA*

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