NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0130028_100344

Scaffold Ga0130028_100344


Overview

Basic Information
Taxon OID3300010023 Open in IMG/M
Scaffold IDGa0130028_100344 Open in IMG/M
Source Dataset NameTerrestrial hot spring microbial mat viral communities from Octopus Spring, Yellowstone National Park, Wyoming (2009) spADES assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDuke University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2479
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Terrestrial Hot Spring Microbial Mat → Terrestrial Hot Spring Microbial Mat Viral Communities From Octopus Spring, Yellowstone National Park, Wyoming

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming
CoordinatesLat. (o)44.53408Long. (o)-110.7979Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F004024Metagenome / Metatranscriptome456N
F008135Metagenome / Metatranscriptome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0130028_1003442F002372AGGGGGMPTRREDALWQIVHRKSSHLRALLDSLDLVDIGVMYELDYYPYAIVELLRIRDNAPPLVLRSVYVQANRQWEYHSEYALRIVEAALQLVEEYRADPSLGGADGV*
Ga0130028_1003443F002795GGCGGMVASYREFISRRDGKTYRVATVFGDLMAGGTVLCQVDGYDVFVDSSYARGEMVELPARMQFLRDGSGRPVIKLYVDQGVR*
Ga0130028_1003444F008135AGGAGGMRAVNDPRTERVLTEAGASIARVLDARQRHAVALAIEVCWYIVAALPPDGGVTFGDVVQLLRWFARGFNEDVEADDGDE*
Ga0130028_1003445F002229GAGMEADMVTLLTFDGVEDVDYTPSDAEIRASLDDCALYGMVLGGVMWMRLSSGAGWWTVVCNRRVTATLAAVGWCWVADGLGARGYWSPALACVPAEVRAMCGDGCVDDDDEE*
Ga0130028_1003447F004024N/AMHSERDYLRQPSLNDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYDRIAPIIESSAIRQSPGASRALRDALRALSLEEYVRRRDERRER*
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