NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0130028_100461

Scaffold Ga0130028_100461


Overview

Basic Information
Taxon OID3300010023 Open in IMG/M
Scaffold IDGa0130028_100461 Open in IMG/M
Source Dataset NameTerrestrial hot spring microbial mat viral communities from Octopus Spring, Yellowstone National Park, Wyoming (2009) spADES assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDuke University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2173
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Terrestrial Hot Spring Microbial Mat → Terrestrial Hot Spring Microbial Mat Viral Communities From Octopus Spring, Yellowstone National Park, Wyoming

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming
CoordinatesLat. (o)44.53408Long. (o)-110.7979Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070754Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0130028_1004611F070754AGGAVVIEPTQGTTPDNPDPNAFVTSFSTWTVGGVFSLNLFGQDFEQEGFAVGDGVFVFLHWQTGSPPYAGYLCQIIGINGSAATFRIDAVGPGSGVPDAQAPLRVVITMTNDRLEIKPAFHFGNNSGLTSPLSVRPFITPHADAIQAYISADPSDLPSPLLYNLQKYVALEPIIDSLGGSASPLSFRRRPIIIEGTQFYAYRTNLDPLAQTPTSLYSLDGRVEVLLQAPVPVRDANLTFPCLLLHPNRKGRTLNFLNPGTLTISGSSYTLTPPSGFTPIRSVLAVTGRDSDHPRLDIADSFALTNPVTGASGTVPTITNRPGAEFVGVMIGQDGGEWVAVMTNKEPVDYPISGPFYVSPHEGPIYRYDSLQATLNIPNAPAGTYIVQTLLKIGNNLCQSMK*
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