NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126305_10124876

Scaffold Ga0126305_10124876


Overview

Basic Information
Taxon OID3300010036 Open in IMG/M
Scaffold IDGa0126305_10124876 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1576
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8693Long. (o)-122.4283Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003229Metagenome / Metatranscriptome499Y
F006197Metagenome379Y

Sequences

Protein IDFamilyRBSSequence
Ga0126305_101248761F003229AGGAGVREDQPTTTIAILGCDTVVGRSLSVLLEGSGYETTLLDSYPTGVVDELLEGAHLLLLTPRVDQGVREAFLGAMGKSTPQVGEMPVIALYTALEDDLPEEEGAIRVPWPCETKVLIERIEAALLDVPAASTSPTTQARPG*
Ga0126305_101248762F006197GGAMRLIGGTGSSREPRLPSGYSLDRSDPDVLVLRSPQGTAVAHFSAQGATAESIEREARTHYRERNRSA*
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