NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126305_10286629

Scaffold Ga0126305_10286629


Overview

Basic Information
Taxon OID3300010036 Open in IMG/M
Scaffold IDGa0126305_10286629 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1066
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8693Long. (o)-122.4283Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023050Metagenome211Y
F095025Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0126305_102866292F095025AGGMGLRGKLRRLEDRAQAIATETQEDQKLERERAIMRMIVDEFARLKACGELSDADPLGQAVRNVAAAQYAELGEESCQYIADGWIETLREWTRLDWMVKAGRNGAPHA*
Ga0126305_102866293F023050GAGLESFELLDGSTYYYDDLQTYEELFLHAYDVQLGDAHKWPEPPEVYRKMCEAKDPAAVLEQFKPDDPERAFVNVAELYDTNVLLRERRLVPLTHAPVEDLSEP*
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