NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126304_10026050

Scaffold Ga0126304_10026050


Overview

Basic Information
Taxon OID3300010037 Open in IMG/M
Scaffold IDGa0126304_10026050 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3394
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8693Long. (o)-122.4282Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007136Metagenome357Y
F012851Metagenome276Y
F023050Metagenome211Y
F095025Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0126304_100260503F007136AGGAVEGSLMADSITARTLDYFGWLVASSIFAVLSAVVTAICVKHEARGLAWLWAAAFFVSALAAAYCLGKLL*
Ga0126304_100260505F012851AGGGGGLGKCSGITQAGTACKGIPIDDSEYCYAHHPDRVSERQRHGSKGGKRGGRGRPIAELASLRDENADIRRRLLEEELLPNVAAVAVQSINTDIRAVGAILKAREQEELRERLEALEEALGRKNEGRRRWGA*
Ga0126304_100260506F095025GGAGLSRLEDRASGIAAERQAGEKLRRARAVMRMVLDEFARLKASGGVSLGDPLAQAVRNVAAAQYADLGEETYENIAEGWIETLREWTRLDWMVKAGRNGPPHA*
Ga0126304_100260508F023050AGGAGMGLRGWIKRLERDASEELESFKLLDGSTYYYDRLETYKELFQHAYDVQLGEGDKWPEPPEVYRKLCEARNPAAVLERFKPEDPHRAFVNLAELYDTDVLVHERRLASLSHAPVEDLSE*
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