NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126304_10060800

Scaffold Ga0126304_10060800


Overview

Basic Information
Taxon OID3300010037 Open in IMG/M
Scaffold IDGa0126304_10060800 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2316
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8693Long. (o)-122.4282Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002328Metagenome570Y
F018130Metagenome / Metatranscriptome236Y
F057155Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0126304_100608001F057155GGAGGMQLHEALIGMRVRVLESDRRAELRGMFGTIEHRFGQPKYLALDVLLDDGRLELFWAHGLESAKEVEKAFKA*
Ga0126304_100608002F018130AGGAGVAQEVHTNEQSANQQPRCEIDKILTAEGECRRPGEVQVDGRLLCVSHAELVRLKDRSETMLGTVFEMDKWLESVDGEADELRVRRIEHQRNEIVEQLRFDSLRMGHLRGELLTDQDGTT*
Ga0126304_100608003F002328AGGAGGVIEQSVAYVLCRIEDDSSLTPVSQHEDILTGIAAGGYAVEVEDLHFAYALYAGDPSNGSSTRVASFREGRIGYRLWATRRGRINPSVEDRYDHDVDELMV*
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