NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0126304_10242809

Scaffold Ga0126304_10242809


Overview

Basic Information
Taxon OID3300010037 Open in IMG/M
Scaffold IDGa0126304_10242809 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1184
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8693Long. (o)-122.4282Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012851Metagenome276Y
F023050Metagenome211Y
F095025Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0126304_102428091F012851N/AGAYLLAKCSGITQAGTACKGIPIDGSDYCYVHHPGRIEERRRHGSKGGKRGGRGRPIAELGALRDENAQIRRRLLEGELLPNVAAVTVQSINTDIRAVGAVLKAREQEEFVERLEGIEEALEQRKGERRYGA*
Ga0126304_102428092F095025GGAGMGLRGKSRRLEDRVQAIATETQEDQKLERERAIMRMIVDEFARLKACGELSDADPLGQAVRNVAAAQYAELGEESCQYIADGWIETLREWTRLDWMVKAGRNGPPHA*
Ga0126304_102428093F023050GAGLESFELLDGSTYYYDDLQTYEELFLHAYDVQLGDAHKWPEPPEVYRKMCEAKDPAAVLEQFKPDDPERAFVNVAELYDTDVLLRERRLVALTHAPVEDLSEP*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.