NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126315_10018814

Scaffold Ga0126315_10018814


Overview

Basic Information
Taxon OID3300010038 Open in IMG/M
Scaffold IDGa0126315_10018814 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3428
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8724Long. (o)-122.4268Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042552Metagenome158N
F066521Metagenome126N
F072725Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0126315_100188142F072725GAGMDAQSTPGGATNREVGDMSVPLEQMLEELRKAEHSRDLMSEVERRLSAGNTDLENLLRQLEQLGQSLAESDPIRLLIEDAVGAARTRDSIKAGSDVSRSRSAIEGEISSLRGAIQGVQARSDL*
Ga0126315_100188143F042552AGGAGGMHEQREHLLEELRKAQQALTLLKELEPHLTESKGKELEGHVRALKQLAQSLPDGHIVRLVIESALEPSNVGTVGRARSALEGEISTLQGALRYGAT*
Ga0126315_100188145F066521N/ALEAISLDGVVLSVEDRVVFIPRESVLQIELYETRGRGSRLRLERDTPEPTDPSDPRVDPGTIGTE*
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