NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126315_10141518

Scaffold Ga0126315_10141518


Overview

Basic Information
Taxon OID3300010038 Open in IMG/M
Scaffold IDGa0126315_10141518 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1417
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8724Long. (o)-122.4268Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023050Metagenome211Y
F095025Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0126315_101415182F095025GGAGMGLRGKVMRLEDRTQAIAAQTQEDEKLERERAIMRIILDEFARLKASGELSDADPLAQAVGNVVAAQYADLGEESCEYIADGWIETLREWASLDWMAKAGRNGVPYA*
Ga0126315_101415183F023050GGAGMRSWIRRLERDARGYLESFELLDSSTYYYDRLQTYKELFLHACDVQLGDADKWLEAPEIYRKMCEAKDPAAVLKRLEPENTERAFVDVTQIYDTDVLVHERRLVPLSVEPPEDLSDP*
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