NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126315_10446520

Scaffold Ga0126315_10446520


Overview

Basic Information
Taxon OID3300010038 Open in IMG/M
Scaffold IDGa0126315_10446520 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)819
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8724Long. (o)-122.4268Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085478Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0126315_104465201F085478N/AMKNSISCTLDKSVDKIKKINKIIIVYAPFLIISFLFTILYFYTDVYAQISNIGNSNNDIQIIKDPEKEVPSLVISFGEKEVEMDPFMYSQNNFSNNKIKGSQVNESQHNIVTKIGPAKLYETQSDIDTTMTLKHGDKIELSYEKQPLTTKAYLIDYDTEKESEIYPLKQIDFSTFSIPNNSPAGLKSLEIRSFYDNNEQVTYTTSVFVESSNPVITTPTVEPNNEEKDKDN*
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