NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126309_10003470

Scaffold Ga0126309_10003470


Overview

Basic Information
Taxon OID3300010039 Open in IMG/M
Scaffold IDGa0126309_10003470 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5911
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8707Long. (o)-122.4274Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001016Metagenome805Y
F004425Metagenome438Y
F022153Metagenome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0126309_1000347011F001016GGAGGVGPQDPKDVTRDLARDLTGMAGELAALKGDARHWLTDPMHADLHLRLGNAHAAVEAAVVEARRRFRMNEEE*
Ga0126309_100034702F004425N/AVLVNATQLLPALRDLYSRLPETYHLQPWELVHVLYSLGYTDDLADEAEIAAAVEVARGDWPQWSAA*
Ga0126309_100034709F022153GAGVRVADPGGFTYAFSRLEQAIEELVGAGDVKERLEAATITLAPIFPDDFPAGHLRDEYADIRQALTWLPPEEGRGQGLAESTLEAMTEEEAGSLAKSLFSLYTSAAEAVYGGLHGR*
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