NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126309_10010339

Scaffold Ga0126309_10010339


Overview

Basic Information
Taxon OID3300010039 Open in IMG/M
Scaffold IDGa0126309_10010339 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3808
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8707Long. (o)-122.4274Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009736Metagenome / Metatranscriptome313Y
F023527Metagenome / Metatranscriptome209Y
F062443Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0126309_100103394F009736AGGGGGMPLNESQQRILKDWMHSKVVVQCPACGDNRWRFAEAAYVRALLEAGEADLTEDEGVVKVPCGNCGYVALFDAETVGIRGVWDKGRDL*
Ga0126309_100103395F062443GAGGMAGKPTPESWVGQGVMIWARSEGRPFEDAHGRVVPGYDQAIGEFSGRLEGVNDLGATLATEDGRLAFFPWTSIARIVLARGKGG*
Ga0126309_100103397F023527AGGAGMAALYCSCEQKPQIWGEFWWTGEKHDWIFFDDRETSETYAERITSCRACGQQLERKNLKALTYPA*
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