Scaffold Ga0126309_10031719

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126309_10031719

Scaffold Ga0126309_10031719

Overview

Basic Information
Taxon OID	3300010039 Open in IMG/M
Scaffold ID	Ga0126309_10031719 Open in IMG/M
Source Dataset Name	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2407
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location Name	UC McLaughlin Reserve (Lake County, CA)
Coordinates	Lat. (^o)	38.8707	Long. (^o)	-122.4274	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001016	Metagenome	805	Y
F002864	Metagenome / Metatranscriptome	525	Y
F072732	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126309_100317192	F001016	GAGG	MPQMGPQDPKDVTRDTARDLSALVGELAALKADATHWLTDPEYATLRHRLEAAHAAVEAALVEARRRVRLNEGREP*
Ga0126309_100317193	F002864	AGGA	VSEREPVRIPKEVLEELESVRRHTRAEVLDIPTIRHTAMERGKPALVVWIDEHQREYGRGLLDGFLAED*
Ga0126309_100317195	F072732	N/A	LFVDGDRVACFAEGRVGYREWARRNGRLYDIHSLDDRYDHDVDELIG*

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