NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126312_10009792

Scaffold Ga0126312_10009792


Overview

Basic Information
Taxon OID3300010041 Open in IMG/M
Scaffold IDGa0126312_10009792 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6423
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8723Long. (o)-122.427Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002196Metagenome / Metatranscriptome584Y
F003251Metagenome / Metatranscriptome497Y
F016524Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0126312_100097926F003251AGGAGVQTKTYTTETGAKKAAARAYGPAIVRLANGRYAWFHAGYPLPQGAHMVSRWGMNQWRANK
Ga0126312_100097927F002196AGGAGMYRTTEDARALLRTAQEIHAERHGLQTFTLGTHLPLEVAGQRTGIRPNSVRYHDAIKELEYEGAIEWGPSARYARGDKHYVITERGLKMLRESGFSPGAP*
Ga0126312_100097928F016524AGGAGGMSQPIRVEGWAYTPGARVNLRLRFRSQKHYGRVKAEFHNPSGEVIKLEGVSHPREESGAAHTEVVLTGHVPESAALGTYECTSVEGLTGDRTWAPIFEDPAFNIRVVQRPFHAQRGGEFL
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