Scaffold Ga0126314_10003071

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126314_10003071

Scaffold Ga0126314_10003071

Overview

Basic Information
Taxon OID	3300010042 Open in IMG/M
Scaffold ID	Ga0126314_10003071 Open in IMG/M
Source Dataset Name	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8480
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location Name	UC McLaughlin Reserve (Lake County, CA)
Coordinates	Lat. (^o)	38.8723	Long. (^o)	-122.4268	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011968	Metagenome	285	Y
F094919	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126314_100030712	F094919	AGGAG	MLRSVVAALGLISVLATLIIVGVLMVNSLGASLGGGLAGDTPSGGATSSVVLRISGTPGVQFNGNYTTPEGSRDISGTLGATPTDYKLGGAGVAGMSAITANAQKQGTYGTLKVQILKDGQVVQSAETTATNSTVSVTYTS*
Ga0126314_100030719	F011968	GGAG	MSEERHEDLNLTPPEEGFELYRYKNAEAMGTRGWSGLYWARKNEAGDYEIRAVTRKGEGYSYPGGVFSQASFERYYEKASFIPPRPRPRDEAE*

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