NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126380_10000055

Scaffold Ga0126380_10000055


Overview

Basic Information
Taxon OID3300010043 Open in IMG/M
Scaffold IDGa0126380_10000055 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24580
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006370Metagenome / Metatranscriptome375Y
F058464Metagenome / Metatranscriptome135Y
F079242Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0126380_1000005516F058464AGGGGGMARDEDLTGATTASDSGTWFADYSARFAKTAEDTARVGAAAADRWARRSLADSDWTVDTVTADIIADWEEMTPLMGRWLDLWLEALQQPIWGARRRER*
Ga0126380_1000005517F079242GGAGVNADRFDGSQDEWRDLVRLATGRMEEYAQLWEGAAAKLSDSSYRSEDLIDDWFTFWGKAIRDMTAGAAVLWAAGMRDAQGRGPMRDDRPGG*
Ga0126380_1000005525F006370GGAGMVPYDTYRIHQIERAKSPAEVRRADEQAARVALAIASLFRGITGLMRAARRPAPAAVPGMPRPA*
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