NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126384_10028750

Scaffold Ga0126384_10028750


Overview

Basic Information
Taxon OID3300010046 Open in IMG/M
Scaffold IDGa0126384_10028750 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3672
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000892Metagenome / Metatranscriptome846Y
F004562Metagenome / Metatranscriptome433Y
F029228Metagenome / Metatranscriptome189N
F067550Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0126384_100287501F004562AGGMSTTVLAYVILFMGFITFLGGLWGVMILIFEEVAKTGRVPFRYYAMMVGLISGGLAMIGVGQALR
Ga0126384_100287505F067550AGGMTSIGKKRELLCHWQRVANLILAKEDVLTVSRALELALFMDAKLDVSSR*
Ga0126384_100287508F029228AGGAGGMNLKNCLSGLGLAALLSLTLAAPANADACSYRMGPFLSQDVAQAAAQQARYLGFEASGVWGRGGLYSDWSNRRYFFNVFYEC*
Ga0126384_100287509F000892N/ARSVPAQTPEQLLELTQEHIRPLIAMIDRLNQAGAEDELKVISRQLTRLVFRAQPLPSGK*

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