NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126384_10038318

Scaffold Ga0126384_10038318


Overview

Basic Information
Taxon OID3300010046 Open in IMG/M
Scaffold IDGa0126384_10038318 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3233
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022988Metagenome / Metatranscriptome212Y
F031395Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0126384_100383185F031395GGAGGMSNVERRELATTEAARSVVDTQTRSRLRGSHEAPTQPRRRGRPPVPIERDPQRFEIACWWAFTEMGLGKFDAARRALLATKGGPITLEDIEGVLVRASATIPLPQPFDPEDPDKGLRRLSAKAQRAAPSPWLINSASLVQGLITFIAAGNLIGVCLAYNGLLRHGWGPVILGLADRIEAALKSNLPPAEIEKLSPAVRRLLAELRHIPKK*
Ga0126384_100383186F022988N/AVLRSPELVPRSPMSNTEHEFADTNRHLVEVPDSFAIARWPRDADVPTIARCILGTLKYEPHTADTTSLRRALETLIEHELATAHKFAEAR*
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