NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126384_10111782

Scaffold Ga0126384_10111782


Overview

Basic Information
Taxon OID3300010046 Open in IMG/M
Scaffold IDGa0126384_10111782 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2038
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002001Metagenome / Metatranscriptome606Y
F028239Metagenome / Metatranscriptome192Y
F040227Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0126384_101117821F040227N/ALSARVDRLEDAISHFYNVINELRRRVSALEKKSKRL*
Ga0126384_101117822F002001N/AMLLRPEYLSQKLDRPLPTKDGGTLRTVLDARTYMLGLSKDREHSARWQRAAELLLAEADVGALTKQVELALFFEAKLDPTAMA*
Ga0126384_101117823F028239N/AMIGKLAEPNLTRRLALLAEARRDDPRVCEHLIEAKAEIERLQAALLGIAKAPREPPAAHFMRDIANAALRPEFRDAG*
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