NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126384_10397771

Scaffold Ga0126384_10397771


Overview

Basic Information
Taxon OID3300010046 Open in IMG/M
Scaffold IDGa0126384_10397771 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1162
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001070Metagenome / Metatranscriptome787Y
F004510Metagenome / Metatranscriptome435Y
F006474Metagenome / Metatranscriptome372Y

Sequences

Protein IDFamilyRBSSequence
Ga0126384_103977712F006474N/AMEVDMRGAENDEPEMSFRRGYQQGAIDIFLAIERCLDPATREVLQAWIEKDVSMWRVKAMLGHPPNWRLNMIAGPRSAARPLGGLDLRYAAGAGL*
Ga0126384_103977713F001070GGAGGMSSIDKMLGWFPHTATEWIEFVIVAVLLWLLMVVAISELKLSSVS*
Ga0126384_103977714F004510GGAGGMITWALIASALIALVLVVLVQGKWTNRDSWFAAVFASAVMAM
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