NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126373_10000003

Scaffold Ga0126373_10000003


Overview

Basic Information
Taxon OID3300010048 Open in IMG/M
Scaffold IDGa0126373_10000003 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)317482
Total Scaffold Genes293 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)195 (66.55%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000231Metagenome / Metatranscriptome1516Y
F000623Metagenome / Metatranscriptome979Y
F001148Metagenome / Metatranscriptome765Y
F012173Metagenome / Metatranscriptome283Y
F012378Metagenome / Metatranscriptome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0126373_10000003242F001148AGGAGGVKDIYEVLRKKQAEQAQLGKQIEALQNAAEQLRNVAHILSEEDESEKGMANHG*
Ga0126373_1000000338F000623N/AMRTDLLPLCDKHFRTMEPSLAPYSPDYSIDFFRCTEKFCGRCFGERVGYANPKRDQPPEVSPSQPRCELHGRPMFIISLDRQRNHITYACTEPDCSQRVVRT*
Ga0126373_1000000353F012378AGGGGGMKDIHEVLRRKQAKYAQLAKQIEALQQAAEKLREVAPLLAENEEDDNVVLAEMDDDATQNQAMAAKASSAPQSSGGKSGRGTAPRWP*
Ga0126373_100000036F000231AGGAGMTNGTNDATLNPFYRCAGPNCGTLKGNSDRWWLMWTSFADMEVPVLYLCPWDETIAQREGTLHVCGELCAQKLQSQFMGNVRENMLRRGEG*
Ga0126373_1000000391F012173N/AMNTPLLPLPISAPIPDAVKKKRVLLIDTSHAKRDLRAEVLRKLGIDVDSAADIVEARVWWKPALYDLVLINMEKGRGQRDKFCDDVRSATPPQRLAFLIGQPEYLADSPNANEELLAENGDEEAAIDANRIVATDVGDTTQRWGILEASRRISAVRSASIARTQAMRGLPPPPRDAEGRPAKPETRPTRLDDLLKEELR*
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