Scaffold Ga0127462_164030

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0127462_164030

Scaffold Ga0127462_164030

Overview

Basic Information
Taxon OID	3300010061 Open in IMG/M
Scaffold ID	Ga0127462_164030 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_0_1 metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	895
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: Angelo Coastal Reserve, California
Coordinates	Lat. (^o)	39.7181	Long. (^o)	-123.6527	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002331	Metagenome / Metatranscriptome	569	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0127462_1640302	F002331	N/A	TGLTISADYGKPNGAYGAGNAFGGRASLGVGTLTLTAGVSSYKSDSIGPDRITTWGGNAAFRLIGGSLLPFSLNLQAGAARTSAVDLGRAQTYVTGAVGFSVPLPTPGISIEPYFSPGIRYRNFGPNNGTSTEFGYVFGANLSFGLLGAHVAYDNERQKGGDNLGVFGVGLHLDLHLPLGM*

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