NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0127442_135291

Scaffold Ga0127442_135291


Overview

Basic Information
Taxon OID3300010068 Open in IMG/M
Scaffold IDGa0127442_135291 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_8_2 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1121
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017460Metagenome / Metatranscriptome240Y
F056454Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0127442_1352912F017460GGAVKKLKKIIGNKKGIDTILAALLMVVIVVVASVMVYAWSTGLLGTLLVTPSTGKEAMNIENYAFNSNVNVTLDLRNTGSSSITLNSYYVKDSSGNQWSRLTWQTDTGGQHPAAIAPNALGIVYVSIGSGASGLGGQCGSSCTPTGSFTQFSTGFSYTVLIVTSRNNQFSFTVTT*
Ga0127442_1352913F056454AGGMNPFRRYLKNKKGINTILASLLMVVIVVVASVMVYAWSTGLLGTLLVQPNVGKE
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