NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0127457_1076069

Scaffold Ga0127457_1076069


Overview

Basic Information
Taxon OID3300010081 Open in IMG/M
Scaffold IDGa0127457_1076069 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_0_2 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1143
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039900Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0127457_10760692F039900AGGAGGMEQFLSDQDQEVWSYVLSDYRTETEKDSEADIPVPDRLLPRRKSQELVRMLKLGQMIGLLLWLNRENLITLGGRERLLYLQAKASFEAMEAGLRFARRLTQEEKLRSDFRHQMRELNRRPQSKHFRQSEARRIGVGYRDKGMLPGSSSGARTAAQKDAYIPSHLVPQILREALRLVI
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Institute for Fundamental Biomedical Research
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