NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0127488_1022679

Scaffold Ga0127488_1022679


Overview

Basic Information
Taxon OID3300010122 Open in IMG/M
Scaffold IDGa0127488_1022679 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_2 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)877
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020872Metagenome / Metatranscriptome221N
F056503Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0127488_10226791F056503AGGAGMNGNSMHWVNRLAALGLVVGLVAGLAAAGSAQSVGGQAYSTYVNTPLGYSGQSPL
Ga0127488_10226792F020872N/ALIVWPSLIAAGLLAAACTDQPKVSMAPNRPAFWVVPPPAQCPTGKWTGGGRIDPPSNPDTPDEAVHPEFFPFELPSVTGKFTFGFNVFLGQDADGNCIVNKGEIEVNGHAQKIAWHVAIHDGVDAYDGRPVHATVFSDAHPGGYCLVVGIPDDYMTARENGKGSTEPYELAQFEVCDNDRGKPQKGKPGPDAMRWRSEHHGDTHLIYLTGGNVVEHGS*
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