NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123376_1015777

Scaffold Ga0123376_1015777


Overview

Basic Information
Taxon OID3300010129 Open in IMG/M
Scaffold IDGa0123376_1015777 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_237_18m (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1642
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NameLouisana Shelf, Hypoxic Zone, Gulf of Mexico
CoordinatesLat. (o)28.8679Long. (o)-90.4764Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021318Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0123376_10157771F021318N/AMASKVFNSKKADYNGMQLWLNPVDKTVYATEGAPKHSFAEAGGYAIYDFNKHFQNQKMAKDNFGNGAYSHDAFVDSEFKALAEDYVSDVKAGGRQRMAALRSSTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYSRSNFEANKYGLKFVIHEEA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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