NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0127493_1122714

Scaffold Ga0127493_1122714


Overview

Basic Information
Taxon OID3300010130 Open in IMG/M
Scaffold IDGa0127493_1122714 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_1 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)696
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017460Metagenome / Metatranscriptome240Y
F056454Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0127493_11227141F056454AGGMNPVRKYLKSKKGINTILASLLMVVIVVVASVMVYAWSTGLL
Ga0127493_11227142F017460N/ADEPTGKLQGVKKLKKIIGNKKGIDTILAALLMVVIVVVASVMVYAWSTGLLGTLLVTPQTGKEAMNIENSAFNSNVNVTLDLRNTGSSSITLNSYYVKDSSGNQWSRLTWQTDSSGQHPAAIAPNALGIVYVSIGTTPLGTGGACGSGCTQTGSSFTQFSTGFSYTIVVVTSRNNQFSFTVTK*
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