NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0127459_1127496

Scaffold Ga0127459_1127496


Overview

Basic Information
Taxon OID3300010133 Open in IMG/M
Scaffold IDGa0127459_1127496 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_2 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)859
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008683Metagenome / Metatranscriptome329Y

Sequences

Protein IDFamilyRBSSequence
Ga0127459_11274961F008683GGGGGMQPRVLIICERAAERETIRVLVGTMGCKWVVASSIEEALAILSRERISAVLLELPGAVSDPDQIHKNVREFLVRFPGRVMALTDGMPTPAISELISKYSIPWVQRDRLAMDLWPRLESMVYPQLGVRRFTKVARLVLDTFLQPLPAGIRYSQQLDLRQLVYEAESVTADIALERSPDSIRTTLLGQLMRINEPHIPMNGVPVVLKSRKGPLGVRMTNEVGEFVFEFQNERSVS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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