NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0127464_1211938

Scaffold Ga0127464_1211938


Overview

Basic Information
Taxon OID3300010139 Open in IMG/M
Scaffold IDGa0127464_1211938 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_8_1 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)891
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001470Metagenome / Metatranscriptome688Y

Sequences

Protein IDFamilyRBSSequence
Ga0127464_12119381F001470GGAGGMSTDTTVVLVHGARLVRRTLPILVGLLTLAAPLVGQARHGHFYHINYYQVRPGQEKAYDSALVDVVTPVFDELVKRKAVVSYLLLTKIAGSGENTHVVIVEVTTPSAEGTFQRELEAASQALFHKSWSDATVRFPELRGFMHAELYTPAGQRP*
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Institute for Fundamental Biomedical Research
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