NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126322_1053332

Scaffold Ga0126322_1053332


Overview

Basic Information
Taxon OID3300010143 Open in IMG/M
Scaffold IDGa0126322_1053332 Open in IMG/M
Source Dataset NameSoil microbial communities from Mekong Delta, Cambodia to study soil gas exchange rates - MK-CA-DRY metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)660
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location NameMekong River Delta, Cambodia
CoordinatesLat. (o)11.5058Long. (o)105.0087Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072008Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0126322_10533321F072008N/AIDIRISDANIIPIPNAHVTILIDKGALAVRRDISAFPNSGYDVLEPAPASNFGSPFSGDTCDQARNGWWQQSTANGNFTWPYLTTSRQQADGFTTYDGLLSACAYFDPVFAPGTTPGRANIQAIVETLNDGGLYYAGTTPGLLNPAYPLGTNLAYPNFLAAPNIVLTATITVVGPPASITVAAAPTSLNCGEKATITVTVKDSAGQNVSDRTRVELVTN
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Institute for Fundamental Biomedical Research
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